FEPrepare

FEP prepare is a webserver which automates the set-up procedure for performing NAMD/FEP simulations.


FEP prepare is a webserver, which automates the set-up procedure for performing NAMD/FEP simulations. ​Automating free energy perturbation calculations is a step forward to delivering high throughput calculations for accurate predictions of relative binding affinities before a compound is synthesized, and consequently save enormous time and cost.

Resource organization

Resource providers

ON-BOARDED 
...
Biomedical Research Foundation, Academy of Athens

Soranou Ephesiou 4, 11527 Athens, Greece (EL)

ON-BOARDED 
...
National Infrastructures for Research and Technology

7 Kifisias ave., 11523 Athens, Greece (EL)

 THEMATIC
ON-BOARDED 

...

Website

https://feprepare.vi-seem.eu/

Readiness

TRL9

Domain

Natural Sciences Engineering & Technology

Subdomain

Chemical Sciences Chemical Engineering

Category

Software

Subcategory

Platform

Target users

Research Groups Businesses Innovators Students Research Projects Researchers Research Organisations

Access type

Virtual

Access mode

Free

Tags

free energy perturbation calculations FEP drug design NAMD molecular dynamics simulations statistical mechanics dual topology file ligands protein inhibitors computational chemistry alchemistry

Contact

Zoe Cournia, Associate Professor
email: zcournia@bioacademy.gr
phone: +302106597195

Helpdesk e-mail

zcournia@bioacademy.gr

Security contact e-mail

zcournia@bioacademy.gr

The NI4OS-Europe project is funded by the European Commission under the Horizon 2020 European research infrastructures grant agreement no. 857645.