Reduce and Visualize Gene Ontology

Web service that summarizes long and unintelligible lists of gene ontology.


REVIGO is a Web server that summarizes long, unintelligible lists of Gene Ontology (GO) terms by finding a representative subset of the terms using a simple clustering algorithm that relies on semantic similarity measures. Furthermore, REVIGO visualizes this non-redundant GO term set in multiple ways to assist in interpretation: multidimensional scaling and graph-based visualizations accurately render the subdivisions and the semantic relationships in the data, while treemaps and tag clouds are also offered as alternative views.

Resource organization

Resource providers

ON-BOARDED 
...
Ruđer Bošković Institute

Bijenička street 54, 10000 Zagreb, Croatia (HR)

ON-BOARDED 
...
Ruđer Bošković Institute

Bijenička street 54, 10000 Zagreb, Croatia (HR)

 THEMATIC
ON-BOARDED 

...

Website

http://revigo.irb.hr

Readiness

TRL9

Domain

Natural Sciences Medical & Health Sciences

Subdomain

Biological Sciences Medical Biotechnology

Category

Data Analysis

Subcategory

Image/Data Analysis Visualization

Target users

Research Groups Students Researchers Research Organisations

Access type

Virtual

Access mode

Free

Tags

Gene ontology data analytics visualization

Contact

Tomislav Šmuc, Research advisor, Head of Laboratory
email: smuc@irb.hr
phone: +38514561085

Helpdesk e-mail

revigo@irb.hr

Security contact e-mail

rajko.horvat@irb.hr

The NI4OS-Europe project is funded by the European Commission under the Horizon 2020 European research infrastructures grant agreement no. 857645.